jigcell.compare.tests
Class ObjectiveBenchmark

java.lang.Object
  jigcell.compare.tests.Benchmark
      jigcell.compare.tests.ObjectiveBenchmark

All Implemented Interfaces:

java.beans.PropertyChangeListener, java.util.EventListener

public class ObjectiveBenchmark
extends Benchmark
implements java.beans.PropertyChangeListener

A collection of tests for evaluating objective function loading performance.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

Field Summary

protected IDataEditorTab	experimentView View to load experimental data in
protected EditableSeriesView	objectiveView View to load objective functions in
protected IDataGenerator	result Record of loading results
protected FileDataSource	source Source to load from

Fields inherited from class jigcell.compare.tests.Benchmark

benchmarkRunnable, compare

Constructor Summary

ObjectiveBenchmark(Compare compare)
Creates a new tester for objective function loading performance.

Method Summary

double	benchmark(int size) Runs an objective loading benchmark.
double	benchmarkAddRow(int size) Runs a benchmark that loads an experiment file, adds a new row, saves the experiment file, loads a transform file, adds a new transform, and saves the transform file.
static IDataGeneratorMap	generateData(int size) Generates some objective functions.
static IObjective	generateObjective(IObjective metric, int seed) Generates a new objective function.
void	propertyChange(java.beans.PropertyChangeEvent e)
IDataGenerator	runBenchmark() Runs a collection of benchmarks for loading objective files.
IDataGenerator	runBenchmarkAddRow() Runs a collection of benchmarks for configuring a new experiment.
protected void	runOffEventThread() Performs the tester computations that do not interact with the interface.
protected void	runOnEventThread(int state) Performs an operation that interacts with the interface.
static void	test(Compare compare) Runs a loading benchmark.

Methods inherited from class jigcell.compare.tests.Benchmark

createBenchmarkReport, currentTime, loadInView, reset, runState, timeRunState

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

objectiveView

protected EditableSeriesView objectiveView

View to load objective functions in

source

protected FileDataSource source

Source to load from

experimentView

protected IDataEditorTab experimentView

View to load experimental data in

result

protected IDataGenerator result

Record of loading results

Constructor Detail

ObjectiveBenchmark

public ObjectiveBenchmark(Compare compare)

Creates a new tester for objective function loading performance.

Parameters:

compare - Comparator to abuse

Method Detail

generateData

public static IDataGeneratorMap generateData(int size)

Generates some objective functions. The objective functions match up with the experiments generated by ExperimentPerformanceTester.

Parameters:

size - Number of objective functions to create

generateObjective

public static IObjective generateObjective(IObjective metric,
                                           int seed)

Generates a new objective function.

Parameters:

metric - Function to use as objective

seed - Number used to create unique data

test

public static void test(Compare compare)

Runs a loading benchmark.

Parameters:

compare - Comparator to abuse

benchmark

public double benchmark(int size)
                 throws java.lang.Exception

Runs an objective loading benchmark.

Parameters:

size - Number of objectives to create

Throws:

java.lang.Exception

benchmarkAddRow

public double benchmarkAddRow(int size)
                       throws java.lang.Exception

Runs a benchmark that loads an experiment file, adds a new row, saves the experiment file, loads a transform file, adds a new transform, and saves the transform file.

Parameters:

size - Size of experiment and transform files

Throws:

java.lang.Exception

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

runBenchmark

public IDataGenerator runBenchmark()
                            throws java.lang.Exception

Runs a collection of benchmarks for loading objective files.

Throws:

java.lang.Exception

runBenchmarkAddRow

public IDataGenerator runBenchmarkAddRow()
                                  throws java.lang.Exception

Runs a collection of benchmarks for configuring a new experiment.

Throws:

java.lang.Exception

runOffEventThread

protected void runOffEventThread()
                          throws java.lang.Exception

Performs the tester computations that do not interact with the interface. This method will be called at the start of the test.

Specified by:

runOffEventThread in class Benchmark

Throws:

java.lang.Exception

runOnEventThread

protected void runOnEventThread(int state)
                         throws java.lang.Exception

Performs an operation that interacts with the interface. After the operation completes, the thread needs to notify the benchmark.

Specified by:

runOnEventThread in class Benchmark

Parameters:

state - Indicates which interface operation is next

Throws:

java.lang.Exception