jigcell.compare.tests
Class ModelBuilderBenchmark

java.lang.Object
  jigcell.compare.tests.Benchmark
      jigcell.compare.tests.ModelBuilderBenchmark

public class ModelBuilderBenchmark
extends Benchmark

A collection of tests for evaluating model builder performance.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

Field Summary

protected java.lang.String	fileName File name to load from
protected ModelBuilderPlugin	plugin Model builder plugin
protected IDataGenerator	result Record of benchmark results
protected IDataEditorTab	view View to load in

Fields inherited from class jigcell.compare.tests.Benchmark

benchmarkRunnable, compare

Constructor Summary

ModelBuilderBenchmark(Compare compare)
Creates a new tester for model builder performance.

Method Summary

double	benchmark(int size) Runs a model builder benchmark.
double	benchmark2(int size) Runs a model builder benchmark.
double	benchmark3(int size) Runs a model builder benchmark.
double	benchmarkAddRow(int size) Runs a benchmark that loads a model file, adds a new row, and saves the model file.
IDataGenerator	runBenchmark() Runs a collection of benchmarks for loading models.
IDataGenerator	runBenchmark2() Runs a collection of benchmarks for loading models.
IDataGenerator	runBenchmark3() Runs a collection of benchmarks for loading models.
IDataGenerator	runBenchmarkAddRow() Runs a collection of benchmarks for adding to model files.
protected void	runOffEventThread() Performs the tester computations that do not interact with the interface.
protected void	runOnEventThread(int state) Performs an operation that interacts with the interface.
static void	test(Compare compare) Runs a model builder benchmark.

Methods inherited from class jigcell.compare.tests.Benchmark

createBenchmarkReport, currentTime, loadInView, reset, runState, timeRunState

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

view

protected IDataEditorTab view

View to load in

result

protected IDataGenerator result

Record of benchmark results

plugin

protected ModelBuilderPlugin plugin

Model builder plugin

fileName

protected java.lang.String fileName

File name to load from

Constructor Detail

ModelBuilderBenchmark

public ModelBuilderBenchmark(Compare compare)

Creates a new tester for model builder performance.

Parameters:

compare - Comparator to abuse

Method Detail

test

public static void test(Compare compare)

Runs a model builder benchmark.

Parameters:

compare - Comparator to abuse

benchmark

public double benchmark(int size)
                 throws java.lang.Exception

Runs a model builder benchmark.

Parameters:

size - Number of reactions to create

Throws:

java.lang.Exception

benchmark2

public double benchmark2(int size)
                  throws java.lang.Exception

Runs a model builder benchmark.

Parameters:

size - Number of reactions to create

Throws:

java.lang.Exception

benchmark3

public double benchmark3(int size)
                  throws java.lang.Exception

Runs a model builder benchmark.

Parameters:

size - Number of reactions to create

Throws:

java.lang.Exception

benchmarkAddRow

public double benchmarkAddRow(int size)
                       throws java.lang.Exception

Runs a benchmark that loads a model file, adds a new row, and saves the model file.

Parameters:

size - Size of model file

Throws:

java.lang.Exception

runBenchmark

public IDataGenerator runBenchmark()
                            throws java.lang.Exception

Runs a collection of benchmarks for loading models.

Throws:

java.lang.Exception

runBenchmark2

public IDataGenerator runBenchmark2()
                             throws java.lang.Exception

Runs a collection of benchmarks for loading models.

Throws:

java.lang.Exception

runBenchmark3

public IDataGenerator runBenchmark3()
                             throws java.lang.Exception

Runs a collection of benchmarks for loading models.

Throws:

java.lang.Exception

runBenchmarkAddRow

public IDataGenerator runBenchmarkAddRow()
                                  throws java.lang.Exception

Runs a collection of benchmarks for adding to model files.

Throws:

java.lang.Exception

runOffEventThread

protected void runOffEventThread()
                          throws java.lang.Exception

Performs the tester computations that do not interact with the interface. This method will be called at the start of the test.

Specified by:

runOffEventThread in class Benchmark

Throws:

java.lang.Exception

runOnEventThread

protected void runOnEventThread(int state)
                         throws java.lang.Exception

Performs an operation that interacts with the interface. After the operation completes, the thread needs to notify the benchmark.

Specified by:

runOnEventThread in class Benchmark

Parameters:

state - Indicates which interface operation is next

Throws:

java.lang.Exception