jigcell.compare.tests
Class ExperimentBenchmark

java.lang.Object
  jigcell.compare.tests.Benchmark
      jigcell.compare.tests.ExperimentBenchmark

All Implemented Interfaces:

java.beans.PropertyChangeListener, java.util.EventListener

public class ExperimentBenchmark
extends Benchmark
implements java.beans.PropertyChangeListener

A collection of tests for evaluating experiment loading performance.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

Field Summary

protected EditableSeriesView	experimentView View to load in
protected IDataGenerator	result Record of loading results
protected FileDataSource	source Source to load from

Fields inherited from class jigcell.compare.tests.Benchmark

benchmarkRunnable, compare

Constructor Summary

ExperimentBenchmark(Compare compare)
Creates a new tester for experiment loading performance.

Method Summary

double	benchmark(int size) Runs a benchmark that loads an experiment file.
double	benchmarkAddRow(int size) Runs a benchmark that loads an experiment file, adds a new row, and saves the experiment file.
static IDataGeneratorList	generateData(int size) Generates some experimental data.
static IDataGenerator	generateGenerator(IEditableDataGenerator generator, int seed) Generates a new experimental setup.
void	propertyChange(java.beans.PropertyChangeEvent e)
IDataGenerator	runBenchmark() Runs a collection of benchmarks for loading experiment files.
IDataGenerator	runBenchmarkAddRow() Runs a collection of benchmarks for adding to experiment files.
protected void	runOffEventThread() Performs the tester computations that do not interact with the interface.
protected void	runOnEventThread(int state) Performs an operation that interacts with the interface.
static void	test(Compare compare) Runs a loading benchmark.

Methods inherited from class jigcell.compare.tests.Benchmark

createBenchmarkReport, currentTime, loadInView, reset, runState, timeRunState

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

experimentView

protected EditableSeriesView experimentView

View to load in

source

protected FileDataSource source

Source to load from

result

protected IDataGenerator result

Record of loading results

Constructor Detail

ExperimentBenchmark

public ExperimentBenchmark(Compare compare)

Creates a new tester for experiment loading performance.

Parameters:

compare - Comparator to abuse

Method Detail

generateData

public static IDataGeneratorList generateData(int size)

Generates some experimental data.

Parameters:

size - Number of generators to create

generateGenerator

public static IDataGenerator generateGenerator(IEditableDataGenerator generator,
                                               int seed)

Generates a new experimental setup.

Parameters:

generator - Generator to configure or null to create a new data generator

seed - Number used to create unique experimental data

test

public static void test(Compare compare)

Runs a loading benchmark.

Parameters:

compare - Comparator to abuse

benchmark

public double benchmark(int size)
                 throws java.lang.Exception

Runs a benchmark that loads an experiment file.

Parameters:

size - Size of experiment file

Throws:

java.lang.Exception

benchmarkAddRow

public double benchmarkAddRow(int size)
                       throws java.lang.Exception

Runs a benchmark that loads an experiment file, adds a new row, and saves the experiment file.

Parameters:

size - Size of experiment file

Throws:

java.lang.Exception

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

runBenchmark

public IDataGenerator runBenchmark()
                            throws java.lang.Exception

Runs a collection of benchmarks for loading experiment files.

Throws:

java.lang.Exception

runBenchmarkAddRow

public IDataGenerator runBenchmarkAddRow()
                                  throws java.lang.Exception

Runs a collection of benchmarks for adding to experiment files.

Throws:

java.lang.Exception

runOffEventThread

protected void runOffEventThread()
                          throws java.lang.Exception

Performs the tester computations that do not interact with the interface. This method will be called at the start of the test.

Specified by:

runOffEventThread in class Benchmark

Throws:

java.lang.Exception

runOnEventThread

protected void runOnEventThread(int state)
                         throws java.lang.Exception

Performs an operation that interacts with the interface. After the operation completes, the thread needs to notify the benchmark.

Specified by:

runOnEventThread in class Benchmark

Parameters:

state - Indicates which interface operation is next

Throws:

java.lang.Exception