jigcell.compare.plotter
Class JPlotBridge

java.lang.Object
  javax.swing.TransferHandler
      jigcell.compare.impl.Transferer
          jigcell.compare.impl.DataSource
              jigcell.compare.plotter.Plotter
                  jigcell.compare.plotter.JPlotBridge

All Implemented Interfaces:

java.awt.datatransfer.Transferable, java.beans.PropertyChangeListener, java.io.Serializable, java.lang.Cloneable, java.util.EventListener, IDataSource, IWriteableDataSource, IPlotter

public final class JPlotBridge
extends Plotter

Standard interface for JPlot.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface jigcell.compare.plotter.IPlotter

IPlotter.Combine

Nested classes/interfaces inherited from interface jigcell.compare.IDataSource

IDataSource.Option

Field Summary

private static java.lang.String	PREFIX_TEMPFILE Prefix for temporary file names
private static int[][]	TABLE_COLORS Table of plotter colors

Fields inherited from class jigcell.compare.plotter.Plotter

data, SERIES_COLOR, SERIES_NAME

Fields inherited from class jigcell.compare.impl.DataSource

OPTIONS_LOCK, SEPARATOR_PAIR, SEPARATOR_PART, SEPARATORS

Fields inherited from class jigcell.compare.impl.Transferer

CSV_FOOTER, CSV_LINEPOSTPEND, CSV_LINEPREPEND, CSV_LINESEPARATOR, HTML_FOOTER, HTML_HEADPOSTPEND, HTML_HEADPREPEND, HTML_HEADSEPARATOR, HTML_LINEPOSTPEND, HTML_LINEPREPEND, HTML_LINESEPARATOR

Fields inherited from class javax.swing.TransferHandler

COPY, COPY_OR_MOVE, MOVE, NONE

Fields inherited from interface jigcell.compare.plotter.IPlotter

OPTION_COMBINE, OPTION_VIEWRANGE, OPTION_VIEWTITLE

Fields inherited from interface jigcell.compare.IWriteableDataSource

OPTION_WRITEDESCRIPTION, OPTION_WRITEICON

Fields inherited from interface jigcell.compare.IDataSource

OPTION_NAME

Constructor Summary

JPlotBridge()
Creates a new JPlot bridge.

Method Summary

private java.io.File	createPointFile() Builds a point file with the plot data.
private java.io.File	createScriptFile(java.lang.String pointFilePath) Builds a script file to control the plot.
private static java.lang.String	getDefaultSeriesColor(long pos) The color of series pos.
java.lang.String	getName() The name of this data source.
void	plot() Produces a plot from the underlying data.
private void	writeCombineAcrossData(java.io.PrintWriter pointFileWriter) Produces a plot using the combine across option.
private void	writeCombineNoneData(java.io.PrintWriter pointFileWriter) Produces a plot using the combine none option.
private void	writeData(java.io.PrintWriter pointFileWriter) Writes data information for the graph to the writer.
private void	writeHeader(java.io.PrintWriter pointFileWriter) Writes header information for the graph to the writer.
private void	writeScript(java.io.PrintWriter scriptFileWriter, java.lang.String pointFilePath) Writes script information for the graph to the writer.

Methods inherited from class jigcell.compare.plotter.Plotter

getPredictedCompatibility, getPredictedCompatibility, getSeries, getSeriesColor, getSeriesColorOption, getSeriesCombine, getSeriesCount, getSeriesName, getSeriesNameOption, getViewRange, isImmutable, setData, setSeries, setSeriesColor, setSeriesCombine, setSeriesName, setSeriesNames, setTitle, setViewRange, splitMultipleSeries, write

Methods inherited from class jigcell.compare.impl.DataSource

addOption, addPropertyChangeListener, addPropertyChangeListener, clone, configure, getOption, getOptions, getOptionType, getPropertyChangeListeners, getPropertyChangeListeners, getReadDescriptionOption, getReadIconOption, getState, getWriteDescriptionOption, getWriteIconOption, initializeSource, persistSource, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setName, setOption, setOptions, setOptionType, setReadDescriptionOption, setReadIconOption, setState, setWriteDescriptionOption, setWriteIconOption, toString, unpersistSource

Methods inherited from class jigcell.compare.impl.Transferer

addExtension, addFlavor, createCSVTable, createFormattedTable, createHTMLTable, getExceptionRecorder, getExpectedClasses, getExpectedClasses, getExpectedClasses, getFlavors, getFlavors, getPreferredExtensions, getPreferredExtensions, getTransferClass, getTransferData, getTransferDataFlavors, getTransferFlavor, isDataFlavorSupported, transfer

Methods inherited from class javax.swing.TransferHandler

canImport, createTransferable, exportAsDrag, exportDone, exportToClipboard, getCopyAction, getCutAction, getPasteAction, getSourceActions, getVisualRepresentation, importData

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface jigcell.compare.IWriteableDataSource

getWriteDescriptionOption, getWriteIconOption, setWriteDescriptionOption, setWriteIconOption

Methods inherited from interface jigcell.compare.IDataSource

addOption, clone, configure, getOption, getState, setOption, setState

Methods inherited from interface java.awt.datatransfer.Transferable

getTransferData, getTransferDataFlavors, isDataFlavorSupported

Field Detail

TABLE_COLORS

private static final int[][] TABLE_COLORS

Table of plotter colors

PREFIX_TEMPFILE

private static final java.lang.String PREFIX_TEMPFILE

Prefix for temporary file names

See Also:

Constant Field Values

Constructor Detail

JPlotBridge

public JPlotBridge()

Creates a new JPlot bridge.

Method Detail

getDefaultSeriesColor

private static java.lang.String getDefaultSeriesColor(long pos)

The color of series pos.

Parameters:

pos - Position

getName

public java.lang.String getName()

The name of this data source.

Specified by:

getName in interface IDataSource

Overrides:

getName in class Plotter

plot

public void plot()
          throws PlotException

Produces a plot from the underlying data.

Throws:

PlotException

createPointFile

private java.io.File createPointFile()
                              throws java.io.IOException,
                                     PlotException

Builds a point file with the plot data.

Throws:

java.io.IOException

PlotException

createScriptFile

private java.io.File createScriptFile(java.lang.String pointFilePath)
                               throws java.io.IOException,
                                      PlotException

Builds a script file to control the plot.

Parameters:

pointFilePath - Path to the point file

Throws:

java.io.IOException

PlotException

writeCombineAcrossData

private void writeCombineAcrossData(java.io.PrintWriter pointFileWriter)
                             throws PlotException

Produces a plot using the combine across option.

Parameters:

pointFileWriter - Writer for point file

Throws:

PlotException

writeCombineNoneData

private void writeCombineNoneData(java.io.PrintWriter pointFileWriter)
                           throws PlotException

Produces a plot using the combine none option.

Parameters:

pointFileWriter - Writer for point file

Throws:

PlotException

writeData

private void writeData(java.io.PrintWriter pointFileWriter)
                throws PlotException

Writes data information for the graph to the writer.

Parameters:

pointFileWriter - Writer for point file

Throws:

PlotException

writeHeader

private void writeHeader(java.io.PrintWriter pointFileWriter)
                  throws PlotException

Writes header information for the graph to the writer.

Parameters:

pointFileWriter - Writer for point file

Throws:

PlotException

writeScript

private void writeScript(java.io.PrintWriter scriptFileWriter,
                         java.lang.String pointFilePath)
                  throws PlotException

Writes script information for the graph to the writer.

Parameters:

scriptFileWriter - Writer for script file

pointFilePath - Path to the plotter point file

Throws:

PlotException