Uses of Class
jigcell.compare.impl.Transferer

Packages that use Transferer

jigcell.compare.cellcycle
jigcell.compare.contrib
jigcell.compare.data
jigcell.compare.impl
jigcell.compare.objective
jigcell.compare.plotter
jigcell.compare.tests
jigcell.compare.transform
jigcell.compare.transform.annotation
jigcell.compare.views

Uses of Transferer in jigcell.compare.cellcycle

Subclasses of Transferer in jigcell.compare.cellcycle

class	BuddingYeastPhenotypeObjective Measures the difference between two budding yeast phenotypes.
class	BuddingYeastScanTransform Computes the phenotype of a budding yeast mutant from a time course of concentrations.
class	CellCycleReportGenerator Prints a summary report of a set of comparisons to a PDF file.
class	GenericPhenotypeObjective Measures the difference between two generic phenotypes.
class	GenericScanTransform Computes the phenotype of a generic mutant from a time course of concentrations.
class	JigCellRunManagerTransform Uses the JigCell Run Manager to execute a simulation.
class	WildtypeScanTransform Quickly scans a time course to determine the mass at division and cycle time.

Uses of Transferer in jigcell.compare.contrib

Subclasses of Transferer in jigcell.compare.contrib

class	DispatchedTransformHelper Methods for reducing the amount of work to make a transform.
class	DispatchedTransformTemplate A DESCRIPTION OF YOUR CLASS.
class	ObjectiveHelper Methods for reducing the amount of work to make an objective function.
class	ObjectiveTemplate A DESCRIPTION OF YOUR CLASS.
class	TransformHelper Methods for reducing the amount of work to make a transform.
class	TransformTemplate A DESCRIPTION OF YOUR CLASS.

Uses of Transferer in jigcell.compare.data

Subclasses of Transferer in jigcell.compare.data

class	CachedDataElement A data element that provides a memory sensitive cache wrapped around another data element.
class	DataElement A helper implementation for data element classes.
class	DataGenerator A default implementation of DataGenerator.
class	EditableDataElement A helper implementation for editable data element classes.
class	EditableDataGenerator Implementation of DataGenerator that supports editing the generator fields.
class	FlippedDataElement An implementation of DataElement that acts as the transpose of another DataElement.
class	PackedDoubleDataElement An implementation of EditableDataElement that uses an array of doubles to store values.
class	PackedTreeDataElement An implementation of EditableDataElement that uses a red-black tree to store values.
class	PackedTreeDataElement2 An implementation of EditableDataElement that uses an AVL tree to store values.
class	ProgrammableDataGenerator A data generator type whose value is determined programmatically, usually with some kind of interface for controlling the program action.
class	SparseTreeDataElement An implementation of EditableDataElement that uses a red-black tree to store values.
class	SparseTreeDataElement2 An implementation of EditableDataElement that uses an AVL tree to store values.
class	TreeDataElement Base class for implementations of EditableDataElement that want to use some form of tree to store values.

Uses of Transferer in jigcell.compare.impl

Subclasses of Transferer in jigcell.compare.impl

class	ClipboardDataSource A generic transfer agent for a source of data that supports reading and writing to a clipboard.
class	Config Controls the configuration of the Comparator and its various components.
class	DataManager Maintains and distributes data sources on demand.
class	DataSource A helper implementation for data source classes.
class	FileDataSource A generic transfer agent for a source of data that supports reading and writing to a file.
class	OwnedDataSource A data source that provides a callback for wrapping native objects prior to data transfer.
class	PDFPrinterDataSource A data source that prints tables to a PDF file.
class	PrinterDataSource A data source that supports writing to a printer.
class	RawFileDataSource A transfer agent that supports reading and writing data to a regular file.
class	SystemPrinterDataSource A transfer agent for a source of data that supports writing to a printer.
class	XMLFileDataSource A transfer agent that supports reading and writing data to a file using XML persistence.

Uses of Transferer in jigcell.compare.objective

Subclasses of Transferer in jigcell.compare.objective

class	BooleanRelationalObjective A generator whose function is the result of a boolean relation.
class	MetricObjective A FunctionalDataGenerator whose function is based upon a metric.
class	MinkowskiObjective A generator whose function is a Lebesgue p-norm.
class	Objective Implementation of DataGenerator whose associated element is a function result.
class	ScriptEvaluationObjective Executes a user provided script when evaluated.
class	WOSSObjective A generator whose function is a weighted orthogonal sum of squares.

Uses of Transferer in jigcell.compare.plotter

Subclasses of Transferer in jigcell.compare.plotter

class	JPlotBridge Standard interface for JPlot.
class	Plotter A default implementation of PlotterInteface.
class	PTPlotBridge Standard interface for PTPlot.

Uses of Transferer in jigcell.compare.tests

Subclasses of Transferer in jigcell.compare.tests

class	ConstantDataSource A data source that returns a constant value.
static class	MethodDispatcherTests.DispatchedTransform Test transform for dispatching.

Uses of Transferer in jigcell.compare.transform

Subclasses of Transferer in jigcell.compare.transform

class	BoxTransformContainer A compositon of statements that acts as single transform.
class	ConstantTransform Transform for testing and use as a stub.
class	ExtremaTestTransform A transform that tests whether a sequence would be passed by a band-pass filter.
class	FileTransform A transform that tracks a file.
class	InputTransform Allows selection of a transform to create a transform chain.
class	ReadFromFileTransform A transform that reads data from a file.
class	ScriptEvaluationTransform Executes a user provided script when evaluated.
class	SelectColumnsTransform A transform that selects a set of columns out of an existing generator.
class	Transform An indvidual statement of a transform as a part of a sequence of steps.
class	TransformContainer A collection of transforms that combine to compute a result.
class	TransformEvaluationTransform A transform that evaluates another named transform.
class	WriteToFileTransform A transform that writes data to a file.

Uses of Transferer in jigcell.compare.transform.annotation

Subclasses of Transferer in jigcell.compare.transform.annotation

class	ColumnCountAnnotationDescriptor A data generator annotation description for the name of a column.
class	ColumnNameAnnotationDescriptor A data generator annotation description for the name of a column.
class	CommentAnnotationDescriptor A data generator annotation description for making a general comment.
class	ElementNameAnnotationDescriptor A data generator annotation description for element names.
class	ElementSizeAnnotationDescriptor A data generator annotation description for element sizes.
class	ElementTypeAnnotationDescriptor A data generator annotation description for element types.
class	TransformAnnotation A default implementation of DataGeneratorAnnotation.
static class	TransformAnnotation.AnnotationDescriptor A default implementation of AnnotationDescriptor.

Uses of Transferer in jigcell.compare.views

Subclasses of Transferer in jigcell.compare.views

static class

SeriesView.SeriesViewTransferer Converts the internal format of the view to and from a Transferable.