Uses of Interface
jigcell.compare.IDataSource

Packages that use IDataSource

jigcell.compare
jigcell.compare.cellcycle
jigcell.compare.contrib
jigcell.compare.data
jigcell.compare.impl
jigcell.compare.objective
jigcell.compare.plotter
jigcell.compare.tests
jigcell.compare.transform

Uses of IDataSource in jigcell.compare

Subinterfaces of IDataSource in jigcell.compare

interface	IDataGenerator This interface is implemented by classes that wish to provide data to the comparator.
interface	IEditableDataGenerator This interface is implemented by classes that wish to store data for the comparator.
interface	IMultipleDataSource A generic transfer agent that supports multiple objects.
interface	IPersistableDataSource A source of data that has persistent storage and a uniquely identifiable address.
interface	IProgrammableDataGenerator A data generator that can derive its value from some programmatic evaluation.
interface	IReadableDataSource A generic transfer agent for a source of data that supports reading.
interface	IWriteableDataSource A generic transfer agent for a source of data that supports writing.

Uses of IDataSource in jigcell.compare.cellcycle

Classes in jigcell.compare.cellcycle that implement IDataSource

class	BuddingYeastPhenotypeObjective Measures the difference between two budding yeast phenotypes.
class	BuddingYeastScanTransform Computes the phenotype of a budding yeast mutant from a time course of concentrations.
class	CellCycleReportGenerator Prints a summary report of a set of comparisons to a PDF file.
class	GenericPhenotypeObjective Measures the difference between two generic phenotypes.
class	GenericScanTransform Computes the phenotype of a generic mutant from a time course of concentrations.
class	JigCellRunManagerTransform Uses the JigCell Run Manager to execute a simulation.
class	WildtypeScanTransform Quickly scans a time course to determine the mass at division and cycle time.

Uses of IDataSource in jigcell.compare.contrib

Classes in jigcell.compare.contrib that implement IDataSource

class	DispatchedTransformHelper Methods for reducing the amount of work to make a transform.
class	DispatchedTransformTemplate A DESCRIPTION OF YOUR CLASS.
class	ObjectiveHelper Methods for reducing the amount of work to make an objective function.
class	ObjectiveTemplate A DESCRIPTION OF YOUR CLASS.
class	TransformHelper Methods for reducing the amount of work to make a transform.
class	TransformTemplate A DESCRIPTION OF YOUR CLASS.

Uses of IDataSource in jigcell.compare.data

Classes in jigcell.compare.data that implement IDataSource

class	DataGenerator A default implementation of DataGenerator.
class	EditableDataGenerator Implementation of DataGenerator that supports editing the generator fields.
class	ProgrammableDataGenerator A data generator type whose value is determined programmatically, usually with some kind of interface for controlling the program action.

Uses of IDataSource in jigcell.compare.impl

Classes in jigcell.compare.impl that implement IDataSource

class	ClipboardDataSource A generic transfer agent for a source of data that supports reading and writing to a clipboard.
class	DataSource A helper implementation for data source classes.
class	FileDataSource A generic transfer agent for a source of data that supports reading and writing to a file.
class	OwnedDataSource A data source that provides a callback for wrapping native objects prior to data transfer.
class	PDFPrinterDataSource A data source that prints tables to a PDF file.
class	PrinterDataSource A data source that supports writing to a printer.
class	RawFileDataSource A transfer agent that supports reading and writing data to a regular file.
class	SystemPrinterDataSource A transfer agent for a source of data that supports writing to a printer.
class	XMLFileDataSource A transfer agent that supports reading and writing data to a file using XML persistence.

Methods in jigcell.compare.impl that return IDataSource

IDataSource

DataManager.getPreferredSource(java.lang.Class clazz) The preferred data source of a particular type.

Methods in jigcell.compare.impl with parameters of type IDataSource

void	DataManager.addPrototypeSource(IDataSource source) Adds the prototype source of a data transfer agent.

Uses of IDataSource in jigcell.compare.objective

Subinterfaces of IDataSource in jigcell.compare.objective

interface	IDimensionWeightObjective A data generator supporting the concept of editable dimension weights.
interface	IElementWeightObjective A data generator supporting the concept of editable element weights.
interface	IInterpolationObjective A data generator supporting the concept of data interpolation.
interface	IObjective A DataGenerator that takes a functional expression and a collection of data to produce an element.
interface	IRelationalObjective A data generator supporting the concept of relational comparisons.

Classes in jigcell.compare.objective that implement IDataSource

class	BooleanRelationalObjective A generator whose function is the result of a boolean relation.
class	MetricObjective A FunctionalDataGenerator whose function is based upon a metric.
class	MinkowskiObjective A generator whose function is a Lebesgue p-norm.
class	Objective Implementation of DataGenerator whose associated element is a function result.
class	ScriptEvaluationObjective Executes a user provided script when evaluated.
class	WOSSObjective A generator whose function is a weighted orthogonal sum of squares.

Uses of IDataSource in jigcell.compare.plotter

Subinterfaces of IDataSource in jigcell.compare.plotter

interface

IPlotter This interface is implemented by classes that wish to provide plotting services to some other program.

Classes in jigcell.compare.plotter that implement IDataSource

class	JPlotBridge Standard interface for JPlot.
class	Plotter A default implementation of PlotterInteface.
class	PTPlotBridge Standard interface for PTPlot.

Uses of IDataSource in jigcell.compare.tests

Classes in jigcell.compare.tests that implement IDataSource

class	ConstantDataSource A data source that returns a constant value.
static class	MethodDispatcherTests.DispatchedTransform Test transform for dispatching.

Uses of IDataSource in jigcell.compare.transform

Subinterfaces of IDataSource in jigcell.compare.transform

interface	IResultantTransform Indicates that this transform represents a result of potential interest.
interface	ITransform A DataGenerator that performs a part of a transform evaluation.
interface	ITransformContainer A transform that can manage a collection of other transforms.

Classes in jigcell.compare.transform that implement IDataSource

class	BoxTransformContainer A compositon of statements that acts as single transform.
class	ConstantTransform Transform for testing and use as a stub.
class	ExtremaTestTransform A transform that tests whether a sequence would be passed by a band-pass filter.
class	FileTransform A transform that tracks a file.
class	InputTransform Allows selection of a transform to create a transform chain.
class	ReadFromFileTransform A transform that reads data from a file.
class	ScriptEvaluationTransform Executes a user provided script when evaluated.
class	SelectColumnsTransform A transform that selects a set of columns out of an existing generator.
class	Transform An indvidual statement of a transform as a part of a sequence of steps.
class	TransformContainer A collection of transforms that combine to compute a result.
class	TransformEvaluationTransform A transform that evaluates another named transform.
class	WriteToFileTransform A transform that writes data to a file.