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| Uses of IDataElement in jigcell.compare |
|---|
| Subinterfaces of IDataElement in jigcell.compare | |
|---|---|
interface |
IEditableDataElement
This interface is implemented by classes that wish to provide a data element to the Comparator with additional editing capabilities. |
| Methods in jigcell.compare that return IDataElement | |
|---|---|
IDataElement |
IDataElement.forceListValue(long pos)
This element at position pos represented as a list. |
IDataElement[] |
IDataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement |
IDataGenerator.getElement()
A DataElement corresponding to this object. |
IDataElement |
IProgrammableDataGenerator.getElement(IEvaluationCallStack callStack)
A DataElement corresponding to this object. |
IDataElement |
IDataElement.getListValue(long pos)
This element at position pos represented as a list. |
IDataElement |
IStructuredTypeChecker.getPrototype()
A prototype for data elements of this type. |
IDataElement[] |
IDataElement.getSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement |
IProgrammableDataGenerator.peekElement()
The element for this generator if no one holds a lock and it is available according to isCached. |
| Methods in jigcell.compare with parameters of type IDataElement | |
|---|---|
void |
IEvaluationListener.evaluationStop(IProgrammableDataGenerator source,
IDataElement result)
Notification for the end of an evaluation. |
IDataElement[] |
IDataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement[] |
IDataElement.getSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
void |
IEditableDataGenerator.setElement(IDataElement element)
Sets the associated data element. |
void |
IEditableDataElement.setValue(IDataElement value)
Sets the element to a list. |
void |
IEditableDataElement.setValue(long pos,
IDataElement value)
Sets an element value to a list. |
boolean |
ITypeChecker.validate(IDataElement data)
Whether a data element is an instance of this type. |
| Uses of IDataElement in jigcell.compare.cellcycle |
|---|
| Fields in jigcell.compare.cellcycle declared as IDataElement | |
|---|---|
protected IDataElement |
CellCycleDataDialog.transformElement
Data element of the transform result |
| Methods in jigcell.compare.cellcycle that return IDataElement | |
|---|---|
private IDataElement |
CellCycleReportGenerator.buildRangeElement()
Constructs a data element with the user's plotter range. |
protected IDataElement |
GenericScanTransform.computeWildtypeProperties()
Computes the wildtype properties for the growth medium of this mutant. |
static IDataElement |
GenericPhenotype.createInviablePhenotype(double averageSubCycles,
long errorCode,
long cycles)
A phenotype which describes an inviable mutant. |
static IDataElement |
BuddingYeastPhenotype.createInviablePhenotype(long errorCode,
long cycles)
A phenotype which describes an inviable mutant. |
static IDataElement |
BuddingYeastPhenotype.createViablePhenotype(double stableG1Length,
double stableDivisionMass)
A phenotype which describes a viable mutant. |
static IDataElement |
GenericPhenotype.createViablePhenotype(double stableG1Length,
double stableDivisionMass,
double averageSubCycles)
A phenotype which describes a viable mutant. |
static IDataElement |
GenericPhenotype.createViablePhenotype(double stableG1Length,
double stableDivisionMass,
double averageSubCycles,
long cycles)
A phenotype which describes a viable mutant. |
static IDataElement |
BuddingYeastPhenotype.createViablePhenotype(double stableG1Length,
double stableDivisionMass,
long cycles)
A phenotype which describes a viable mutant. |
protected IDataElement |
JigCellRunManagerTransform.evaluate()
Evaluates the associated element. |
protected IDataElement |
BuddingYeastScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
GenericScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
WildtypeScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
GenericPhenotypeObjective.evaluate(IDataElement input)
Computes the values of this generator. |
IDataElement |
CellCycleReportGenerator.getColumnSelection()
The column selection option. |
IDataElement |
BuddingYeastNocPhenotype.getPrototype()
A prototype for data elements of this type. Implementations that do not want to provide a prototype element should return null. |
IDataElement |
BuddingYeastPhenotype.getPrototype()
A prototype for data elements of this type. Implementations that do not want to provide a prototype element should return null. |
IDataElement |
BuddingYeastWildtypeProperties.getPrototype()
A prototype for data elements of this type. Implementations that do not want to provide a prototype element should return null. |
IDataElement |
GenericPhenotype.getPrototype()
A prototype for data elements of this type. Implementations that do not want to provide a prototype element should return null. |
IDataElement |
CellCycleReportGenerator.getViewRange()
The view range option. |
protected IDataElement |
JigCellRunManagerTransform.run(int runNumber)
Executes one of the runs from the run file. |
| Methods in jigcell.compare.cellcycle with parameters of type IDataElement | |
|---|---|
private ITransform |
CellCycleReportGenerator.applyColumnSelection(ITransform transform,
IDataElement columnSelection)
Applies the column selection to a transform. |
protected static boolean |
GenericPhenotypeObjective.checkPhenotype(IDataElement element,
long index,
IDataElement.Type type,
boolean optional,
java.lang.String field)
Validates that the data in a given element matches the phenotype pattern. |
protected IDataElement |
BuddingYeastScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
GenericScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
WildtypeScanTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
GenericPhenotypeObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected double |
BuddingYeastPhenotypeObjective.evaluateInviable(IDataElement experiment,
IDataElement transform)
Computes the objective for an experiment that is inviable. |
protected double |
GenericPhenotypeObjective.evaluateInviable(IDataElement experiment,
IDataElement transform)
Computes the objective for an experiment that is inviable. |
protected double |
BuddingYeastPhenotypeObjective.evaluateViable(IDataElement experiment,
IDataElement transform)
Computes the objective for an experiment that is viable. |
protected double |
GenericPhenotypeObjective.evaluateViable(IDataElement experiment,
IDataElement transform)
Computes the objective for an experiment that is viable. |
private static com.lowagie.text.Image |
CellCycleReportGenerator.generatePlotImage(IDataElement viewRange,
ITransform transform)
Produces a plot image of the time series data in the transform. |
void |
CellCycleReportGenerator.setColumnSelection(IDataElement selection)
The column selection option. |
void |
CellCycleReportGenerator.setViewRange(IDataElement range)
Sets the view range option. |
boolean |
BuddingYeastNocPhenotype.validate(IDataElement data)
Whether a data element is an instance of this type. |
boolean |
BuddingYeastPhenotype.validate(IDataElement data)
Whether a data element is an instance of this type. |
boolean |
BuddingYeastWildtypeProperties.validate(IDataElement data)
Whether a data element is an instance of this type. |
boolean |
GenericPhenotype.validate(IDataElement data)
Whether a data element is an instance of this type. |
| Constructors in jigcell.compare.cellcycle with parameters of type IDataElement | |
|---|---|
BuddingYeastScanTransform.BuddingYeastScanPoint(IDataElement element,
double wildtypeMass)
Extracts the point values from a time course observation. |
|
GenericScanTransform.GenericScanPoint(IDataElement element,
double wildtypeMass)
Extracts the point values from a time course observation. |
|
| Uses of IDataElement in jigcell.compare.contrib |
|---|
| Methods in jigcell.compare.contrib that return IDataElement | |
|---|---|
protected IDataElement |
ObjectiveHelper.evaluate(IDataElement input)
Evaluates and returns the associated element. |
protected IDataElement |
TransformTemplate.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
DispatchedTransformHelper.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
TransformHelper.getPreviousElement()
Data element that should be used in evaluation. |
IDataElement |
StructuredTypeCheckerTemplate.getPrototype()
A prototype for data elements of this type. Implementations that do not want to provide a prototype element should return null. |
| Methods in jigcell.compare.contrib with parameters of type IDataElement | |
|---|---|
protected IDataElement |
ObjectiveHelper.evaluate(IDataElement input)
Evaluates and returns the associated element. |
protected IDataElement |
TransformTemplate.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
DispatchedTransformHelper.evaluate(IDataElement input)
Evaluates the transform. |
protected abstract double |
ObjectiveHelper.evaluate(IDataElement input1,
IDataElement input2)
Evaluates and returns the associated element. |
protected double |
ObjectiveTemplate.evaluate(IDataElement input1,
IDataElement input2)
Evaluates and returns the associated element. |
boolean |
StructuredTypeCheckerTemplate.validate(IDataElement input)
Whether a data element is an instance of this type. |
| Uses of IDataElement in jigcell.compare.data |
|---|
| Classes in jigcell.compare.data that implement IDataElement | |
|---|---|
class |
CachedDataElement
A data element that provides a memory sensitive cache wrapped around another data element. |
class |
DataElement
A helper implementation for data element classes. |
class |
EditableDataElement
A helper implementation for editable data element classes. |
class |
FlippedDataElement
An implementation of DataElement that acts as the transpose of another DataElement. |
class |
PackedDoubleDataElement
An implementation of EditableDataElement that uses an array of doubles to store values. |
class |
PackedTreeDataElement
An implementation of EditableDataElement that uses a red-black tree to store values. |
class |
PackedTreeDataElement2
An implementation of EditableDataElement that uses an AVL tree to store values. |
class |
SparseTreeDataElement
An implementation of EditableDataElement that uses a red-black tree to store values. |
class |
SparseTreeDataElement2
An implementation of EditableDataElement that uses an AVL tree to store values. |
class |
TreeDataElement
Base class for implementations of EditableDataElement that want to use some form of tree to store values. |
| Fields in jigcell.compare.data declared as IDataElement | |
|---|---|
protected IDataElement |
CachedDataElement.cache
Element for use in memory locking |
private IDataElement |
EditableDataGenerator.element
Cached version of the associated element |
protected IDataElement |
FlippedDataElement.tie
Original element |
| Methods in jigcell.compare.data that return IDataElement | |
|---|---|
static IDataElement |
MethodDispatcher.convertToElement(java.lang.Object o)
Converts a collection of objects to a DataElement. |
IDataElement |
MethodDispatcher.dispatch(IDataElement element)
Performs method dispatching on the target with a DataElement. |
protected abstract IDataElement |
ProgrammableDataGenerator.evaluate()
Evaluates the associated element. |
static IDataElement |
FlippedDataElement.flip(IDataElement element)
Produces a DataElement that acts as the transpose of another DataElement. |
static IDataElement |
FlippedDataElement.flip(IDataElement element,
boolean tied)
Produces a DataElement that acts as the transpose of another DataElement. |
IDataElement |
DataElement.forceListValue(long pos)
This element at position pos represented as a list. |
IDataElement[] |
DataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement[] |
EditableDataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. If slice cannot hold the requested range, a new array is created and returned. Slice may be null. If the given length has no valid meaning, the value is null. Elements not of type list are suitably coerced. Past the defined range of the list, all values are considered scalars of no type. Position 0 in the returned slice corresponds to position start in the original element. |
IDataElement |
IResultSetMap.get(IDataGeneratorCollection.Key key)
The result associated with a particular key or null if there is no such mapping. |
IDataElement |
ResultSetMap.get(IDataGeneratorCollection.Key key)
The result associated with a particular key or null if there is no such mapping. |
protected IDataElement |
CachedDataElement.getCachedElement()
Retrieves the cached element for use. |
IDataElement |
DataGenerator.getElement()
A DataElement corresponding to this object. |
IDataElement |
ProgrammableDataGenerator.getElement()
A DataElement corresponding to this object. This may be a potentially expensive operation if isCached is false. |
IDataElement |
EditableDataGenerator.getElement()
A DataElement corresponding to this object. This may be a potentially expensive operation if isCached is false. |
IDataElement |
ProgrammableDataGenerator.getElement(IEvaluationCallStack callStack)
A DataElement corresponding to this object. |
IDataElement |
CachedDataElement.getListValue(long pos)
This element at position pos represented as a list. If the given position has no valid meaning for this element, the value is null. |
IDataElement |
FlippedDataElement.getListValue(long pos)
This element at position pos represented as a list. |
IDataElement |
DataElement.getListValue(long pos)
This element at position pos represented as a list. |
IDataElement |
EditableDataElement.getListValue(long pos)
This element at position pos represented as a list. If the given position has no valid meaning for this element, the value is null. |
IDataElement[] |
DataElement.getSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement |
FlippedDataElement.getTiedElement()
The tied data element if this element is tied or null otherwise. |
IDataElement |
ProgrammableDataGenerator.peekElement()
The element for this generator if no one holds a lock and it is available according to isCached. |
IDataElement |
IResultSetMap.put(IDataGeneratorCollection.Key key,
IDataElement result)
Adds a mapping between a key and result. |
IDataElement |
ResultSetMap.put(IDataGeneratorCollection.Key key,
IDataElement result)
Adds a mapping between a key and result. |
IDataElement |
IResultSetMap.put(IDataGeneratorCollection.Key key,
java.lang.String result)
Adds a mapping between a key and result. |
IDataElement |
ResultSetMap.put(IDataGeneratorCollection.Key key,
java.lang.String result)
Adds a mapping between a key and result. |
IDataElement |
IResultSetMap.put(java.lang.String name,
java.lang.String id,
IDataElement result)
Adds a mapping between a name, id, and result. |
IDataElement |
ResultSetMap.put(java.lang.String name,
java.lang.String id,
IDataElement result)
Adds a mapping between a name, id, and result. |
IDataElement |
IResultSetMap.put(java.lang.String name,
java.lang.String id,
java.lang.String result)
Adds a mapping between a name, id, and result. |
IDataElement |
ResultSetMap.put(java.lang.String name,
java.lang.String id,
java.lang.String result)
Adds a mapping between a name, id, and result. |
| Methods in jigcell.compare.data with parameters of type IDataElement | |
|---|---|
static java.lang.Object |
MethodDispatcher.convertFromElement(IDataElement element)
Converts a DataElement to a collection of objects. |
protected void |
CachedDataElement.createCachedElement(IDataElement element)
Creates the backend representation of the cached element. |
static IEditableDataElement |
EditableDataElement.createElement(IDataElement element)
Generates an element from an existing DataElement. |
static IEditableDataElement |
EditableDataElement.createElementSafe(IDataElement element)
Generates an element from an existing DataElement. |
IDataElement |
MethodDispatcher.dispatch(IDataElement element)
Performs method dispatching on the target with a DataElement. |
protected void |
ProgrammableDataGenerator.fireEvaluationStop(IDataElement result)
Notifies listeners of an evaluation stop event. |
static IDataElement |
FlippedDataElement.flip(IDataElement element)
Produces a DataElement that acts as the transpose of another DataElement. |
static IDataElement |
FlippedDataElement.flip(IDataElement element,
boolean tied)
Produces a DataElement that acts as the transpose of another DataElement. |
IDataElement[] |
DataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement[] |
EditableDataElement.forceSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. If slice cannot hold the requested range, a new array is created and returned. Slice may be null. If the given length has no valid meaning, the value is null. Elements not of type list are suitably coerced. Past the defined range of the list, all values are considered scalars of no type. Position 0 in the returned slice corresponds to position start in the original element. |
IDataElement[] |
DataElement.getSlice(IDataElement[] slice,
long start,
int length,
long stride)
A dense, homogeneous subset of this element represented as a list of elements. |
IDataElement |
IResultSetMap.put(IDataGeneratorCollection.Key key,
IDataElement result)
Adds a mapping between a key and result. |
IDataElement |
ResultSetMap.put(IDataGeneratorCollection.Key key,
IDataElement result)
Adds a mapping between a key and result. |
IDataElement |
IResultSetMap.put(java.lang.String name,
java.lang.String id,
IDataElement result)
Adds a mapping between a name, id, and result. |
IDataElement |
ResultSetMap.put(java.lang.String name,
java.lang.String id,
IDataElement result)
Adds a mapping between a name, id, and result. |
void |
EditableDataGenerator.setElement(IDataElement element)
Sets the associated data element. |
void |
TreeDataElement.setValue(IDataElement value)
Sets the element to a list. |
void |
EditableDataElement.setValue(IDataElement value)
Sets the element to a list. |
void |
PackedDoubleDataElement.setValue(IDataElement value)
Sets the element to a list. |
void |
EditableDataElement.setValue(long pos,
IDataElement value)
Sets an element value to a list. |
static java.lang.String |
DataElement.toString(IDataElement element)
Renders the DataElement as an ordered tuple. |
static java.lang.String |
DataElement.toString(IDataElement element,
boolean limit,
int size)
Renders the DataElement as an ordered tuple. |
static java.lang.String |
DataElement.toString(IDataElement element,
boolean limit,
int size,
long pos)
Renders the value of a specified position. |
static java.lang.String |
DataElement.toString(IDataElement element,
boolean limit,
int size,
long pos,
java.text.NumberFormat format)
Renders the value of a specified position. |
static java.lang.String |
DataElement.toString(IDataElement element,
boolean limit,
int size,
java.text.NumberFormat format)
Renders the DataElement as an ordered tuple. |
static java.lang.String |
DataElement.toString(IDataElement element,
long pos)
Renders the value of a specified position. |
static java.lang.String |
DataElement.toString(IDataElement element,
long pos,
java.text.NumberFormat format)
Renders the value of a specified position. |
static java.lang.String |
DataElement.toString(IDataElement element,
java.text.NumberFormat format)
Renders the DataElement as an ordered tuple. |
| Constructors in jigcell.compare.data with parameters of type IDataElement | |
|---|---|
CachedDataElement(IDataElement element)
Creates a new data element cache. |
|
EditableDataGenerator(IDataElement element)
Creates a new data generator that supports editing. |
|
FlippedDataElement(IDataElement element)
Creates a new flipped data element from an existing data element. |
|
FlippedDataElement(IDataElement element,
boolean tied)
Creates a new flipped data element from an existing data element. |
|
FlippedDataElement(IDataElement element,
boolean tied,
long index)
Creates a new flipped data element from an existing data element. |
|
| Uses of IDataElement in jigcell.compare.data.type |
|---|
| Methods in jigcell.compare.data.type that return IDataElement | |
|---|---|
IDataElement |
StructuredTypeChecker.getPrototype()
A prototype for data elements of this type. |
| Methods in jigcell.compare.data.type with parameters of type IDataElement | |
|---|---|
boolean |
TimeSeriesTypeChecker.validate(IDataElement data)
Whether a data element is an instance of this type. |
boolean |
TypeChecker.validate(IDataElement data)
Whether a data element is an instance of this type. |
| Uses of IDataElement in jigcell.compare.objective |
|---|
| Fields in jigcell.compare.objective declared as IDataElement | |
|---|---|
protected static IDataElement |
Objective.ERROR
Error result |
| Methods in jigcell.compare.objective that return IDataElement | |
|---|---|
protected IDataElement |
Objective.evaluate()
Evaluates the associated element. |
protected IDataElement |
MetricObjective.evaluate()
Evaluates the associated element. |
protected IDataElement |
MinkowskiObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
ScriptEvaluationObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
Objective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
WOSSObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
BooleanRelationalObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
MinkowskiObjective.evaluate1(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = 1.0. |
protected IDataElement |
MinkowskiObjective.evaluate2(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = 2.0. |
protected IDataElement |
BooleanRelationalObjective.evaluateEquality(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for equality. |
protected IDataElement |
BooleanRelationalObjective.evaluateGreaterThan(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than. |
protected IDataElement |
BooleanRelationalObjective.evaluateGreaterThanEqual(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
BooleanRelationalObjective.evaluateInequality(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for inequality. |
protected IDataElement |
BooleanRelationalObjective.evaluateLessThan(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
BooleanRelationalObjective.evaluateLessThanEqual(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
WOSSObjective.evaluateLinear(IDataElement e1,
IDataElement e2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
IDataElement elementWeights,
double elementWeightDefault)
Computes weighted orthogonal sum of squares with linear interpolation. |
protected IDataElement |
MinkowskiObjective.evaluateMax(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = infinity. |
protected IDataElement |
WOSSObjective.evaluateNone(IDataElement e1,
IDataElement e2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
IDataElement elementWeights,
double elementWeightDefault)
Computes weighted orthogonal sum of squares without interpolation. |
protected IDataElement |
MinkowskiObjective.evaluatep(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for finite p. |
IDataElement |
WOSSObjective.getDimensionWeights()
The dimension weights. |
IDataElement |
IDimensionWeightObjective.getDimensionWeights()
The dimension weights. |
IDataElement |
MinkowskiObjective.getElementWeights()
The element weights. |
IDataElement |
WOSSObjective.getElementWeights()
The element weights. |
IDataElement |
IElementWeightObjective.getElementWeights()
The element weights. |
| Methods in jigcell.compare.objective with parameters of type IDataElement | |
|---|---|
protected IDataElement |
MinkowskiObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
ScriptEvaluationObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
Objective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
WOSSObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
BooleanRelationalObjective.evaluate(IDataElement input)
Computes the values of this generator. |
protected IDataElement |
MinkowskiObjective.evaluate1(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = 1.0. |
protected IDataElement |
MinkowskiObjective.evaluate2(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = 2.0. |
protected IDataElement |
BooleanRelationalObjective.evaluateEquality(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for equality. |
protected IDataElement |
BooleanRelationalObjective.evaluateGreaterThan(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than. |
protected IDataElement |
BooleanRelationalObjective.evaluateGreaterThanEqual(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
BooleanRelationalObjective.evaluateInequality(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for inequality. |
protected IDataElement |
BooleanRelationalObjective.evaluateLessThan(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
BooleanRelationalObjective.evaluateLessThanEqual(IDataElement e1,
IDataElement e2)
Evaluates and returns the associated element for greater than or equal. |
protected IDataElement |
WOSSObjective.evaluateLinear(IDataElement e1,
IDataElement e2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
IDataElement elementWeights,
double elementWeightDefault)
Computes weighted orthogonal sum of squares with linear interpolation. |
private double |
WOSSObjective.evaluateLinear(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement e2,
IDataElement[] e2Buffer,
long l2,
double[] e2xBuffer,
double[] e2xBuffer2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares with linear interpolation. |
private double |
WOSSObjective.evaluateLinear(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement e2,
IDataElement[] e2Buffer,
long l2,
double[] e2xBuffer,
double[] e2xBuffer2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares with linear interpolation. |
private double |
WOSSObjective.evaluateLinear(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement _e2,
IDataElement _e3,
double[] e2xBuffer,
double[] e2xBuffer2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares with linear interpolation. |
private double |
WOSSObjective.evaluateLinear(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement _e2,
IDataElement _e3,
double[] e2xBuffer,
double[] e2xBuffer2,
IDataElement dimensionWeights,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares with linear interpolation. |
protected IDataElement |
MinkowskiObjective.evaluateMax(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for p = infinity. |
protected IDataElement |
WOSSObjective.evaluateNone(IDataElement e1,
IDataElement e2,
IDataElement dimensionWeights,
double dimensionWeightDefault,
IDataElement elementWeights,
double elementWeightDefault)
Computes weighted orthogonal sum of squares without interpolation. |
private double |
WOSSObjective.evaluateNone(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement _e2,
double[] e2xBuffer,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares without interpolation. |
private double |
WOSSObjective.evaluateNone(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement _e2,
double[] e2xBuffer,
IDataElement dimensionWeights,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares without interpolation. |
private double |
WOSSObjective.evaluateNone(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement e2,
IDataElement[] e2Buffer,
long l2,
double[] e2xBuffer,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares without interpolation. |
private double |
WOSSObjective.evaluateNone(IDataElement _e1,
long l,
double[] e1xBuffer,
IDataElement e2,
IDataElement[] e2Buffer,
long l2,
double[] e2xBuffer,
IDataElement dimensionWeights,
double dimensionWeightDefault,
long dl,
double[] scaleBuffer)
Helper function for computing weighted orthogonal sum of squares without interpolation. |
protected IDataElement |
MinkowskiObjective.evaluatep(IDataElement e1,
IDataElement e2,
IDataElement elementWeights,
double defaultWeight,
double[] e1Buffer,
double[] e2Buffer,
double[] scaleBuffer)
Evaluates and returns the associated element for finite p. |
void |
WOSSObjective.setDimensionWeights(IDataElement weights)
Sets the suggested dimension weights. |
void |
IDimensionWeightObjective.setDimensionWeights(IDataElement weights)
Sets the suggested dimension weights. |
void |
MinkowskiObjective.setElementWeights(IDataElement weights)
Sets the suggested element weights. |
void |
WOSSObjective.setElementWeights(IDataElement weights)
Sets the suggested element weights. |
void |
IElementWeightObjective.setElementWeights(IDataElement weights)
Sets the suggested element weights. |
| Uses of IDataElement in jigcell.compare.objectiveui |
|---|
| Fields in jigcell.compare.objectiveui declared as IDataElement | |
|---|---|
protected IDataElement |
WeightEditorDialog.referenceElement
Data element of the reference selection |
| Constructors in jigcell.compare.objectiveui with parameters of type IDataElement | |
|---|---|
WeightEditorDialog(Compare compare,
IDataElement weight,
java.lang.String name)
Creates a new dialog for editing weights. |
|
| Uses of IDataElement in jigcell.compare.plotter |
|---|
| Fields in jigcell.compare.plotter declared as IDataElement | |
|---|---|
protected IDataElement |
Plotter.data
Data aggregate |
| Methods in jigcell.compare.plotter that return IDataElement | |
|---|---|
IDataElement |
Plotter.getSeries(long pos)
A data series from the data aggregate. |
IDataElement |
IPlotter.getSeries(long pos)
A data series from the data aggregate. |
IDataElement |
Plotter.getViewRange()
The view range option. |
IDataElement |
IPlotter.getViewRange()
The view range option. |
static IDataElement |
Plotter.splitMultipleSeries(IDataElement series)
Splits time series data with multiple series to multiple time series with a single series. |
| Methods in jigcell.compare.plotter with parameters of type IDataElement | |
|---|---|
void |
Plotter.setData(IDataElement data)
Sets the data aggregate. |
void |
IPlotter.setData(IDataElement data)
Sets the data aggregate. |
void |
Plotter.setSeries(long pos,
IDataElement series)
Sets one of the data series in the aggregate. |
void |
IPlotter.setSeries(long pos,
IDataElement series)
Sets one of the data series in the aggregate. |
void |
Plotter.setViewRange(IDataElement range)
Sets the view range option. |
void |
IPlotter.setViewRange(IDataElement range)
Sets the view range option. |
static IDataElement |
Plotter.splitMultipleSeries(IDataElement series)
Splits time series data with multiple series to multiple time series with a single series. |
| Uses of IDataElement in jigcell.compare.tests |
|---|
| Methods in jigcell.compare.tests that return IDataElement | |
|---|---|
IDataElement |
MethodDispatcherTests.DispatchedTransform.customEvaluate2(IDataElement input)
Evaluates the associated element. |
protected IDataElement |
MethodDispatcherTests.DispatchedTransform.evaluate(IDataElement input)
Evaluates the associated element. |
| Methods in jigcell.compare.tests with parameters of type IDataElement | |
|---|---|
IDataElement |
MethodDispatcherTests.DispatchedTransform.customEvaluate2(IDataElement input)
Evaluates the associated element. |
protected IDataElement |
MethodDispatcherTests.DispatchedTransform.evaluate(IDataElement input)
Evaluates the associated element. |
| Uses of IDataElement in jigcell.compare.transform |
|---|
| Fields in jigcell.compare.transform declared as IDataElement | |
|---|---|
protected static IDataElement |
ExtremaTestTransform.FALSE
False value |
protected static IDataElement |
ExtremaTestTransform.TRUE
True value |
protected IDataElement |
ConstantTransform.value
Value to generate |
| Methods in jigcell.compare.transform that return IDataElement | |
|---|---|
protected IDataElement |
Transform.evaluate()
Evaluates the associated element. |
protected IDataElement |
BoxTransformContainer.evaluate()
Evaluates the associated element. |
protected IDataElement |
ReadFromFileTransform.evaluate()
Evaluates the associated element. |
protected IDataElement |
TransformEvaluationTransform.evaluate()
Evaluates the associated element. |
protected IDataElement |
ScriptEvaluationTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
Transform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
ConstantTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
SelectColumnsTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
WriteToFileTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
ExtremaTestTransform.evaluate(IDataElement input)
Evaluates the transform. |
IDataElement |
SelectColumnsTransform.getColumns()
The selected columns. |
protected IDataElement |
Transform.getPreviousElement()
Data element that should be used in evaluation. |
IDataElement |
ConstantTransform.getValue()
The value this transform will generate. |
| Methods in jigcell.compare.transform with parameters of type IDataElement | |
|---|---|
protected IDataElement |
ScriptEvaluationTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
Transform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
ConstantTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
SelectColumnsTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
WriteToFileTransform.evaluate(IDataElement input)
Evaluates the transform. |
protected IDataElement |
ExtremaTestTransform.evaluate(IDataElement input)
Evaluates the transform. |
private void |
TransformContext.evaluationStop(IProgrammableDataGenerator source,
IDataElement result)
|
void |
ConstantTransform.setValue(IDataElement value)
Sets the value this transform will generate. |
| Constructors in jigcell.compare.transform with parameters of type IDataElement | |
|---|---|
ConstantTransform(IDataElement value)
Creates a new transform with constant value. |
|
| Uses of IDataElement in jigcell.compare.ui |
|---|
| Fields in jigcell.compare.ui declared as IDataElement | |
|---|---|
protected IDataElement |
SeriesDialog.element
DataElement being viewed |
| Constructors in jigcell.compare.ui with parameters of type IDataElement | |
|---|---|
SeriesDialog(Compare compare,
IDataElement element,
java.lang.String name,
int row,
int column,
BasicTable.BasicTableModel model)
Creates a new dialog for viewing list based data. |
|
SeriesDialog(Compare compare,
IDataGenerator generator,
IDataElement element,
ITypeChecker checker,
java.lang.String name,
int row,
int column,
BasicTable.BasicTableModel model)
Creates a new dialog for viewing list based data. |
|
| Uses of IDataElement in jigcell.compare.views |
|---|
| Fields in jigcell.compare.views declared as IDataElement | |
|---|---|
protected IDataElement |
TransformDebugger.debugValue
Value being debugged |
protected IDataElement |
TransformDebugger.transformValue
Value for the currently selected transform |
| Methods in jigcell.compare.views with parameters of type IDataElement | |
|---|---|
void |
TransformDebugger.DebuggerThread.evaluationStop(IProgrammableDataGenerator source,
IDataElement result)
Notification for the end of an evaluation. |
void |
EvaluationErrorViewer.evaluationStop(IProgrammableDataGenerator source,
IDataElement result)
Notification for the end of an evaluation. |
protected void |
TransformDebugger.DebuggerThread.updateDisplay(ITransform transform,
IDataElement element)
Updates the display after a debug event. |
|
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